The 5 Best Boutique Hotels with Spa in Sabah (2025)

Nestled on the northern tip of Borneo, Sabah, Malaysia, is a vibrant tapestry of lush rainforests, pristine beaches, and rich cultural heritage. This captivating region offers a striking blend of modernity and tradition, inviting travelers to explore its colorful markets, taste tantalizing local cuisine, and embark on unforgettable adventures in nature. As you immerse yourself in Sabah’s enchanting atmosphere, the boutique hotel scene emerges as a sanctuary of style and comfort, providing a uniquely tailored experience that reflects the essence of the locale. Highlights include the stunning Bunga Raya Island Resort & Spa, where luxurious accommodations meet unparalleled natural beauty; the chic Le Meridien Kota Kinabalu, offering breathtaking views of the South China Sea and a vibrant city vibe; and the Gaya Island Resort, part of the Small Luxury Hotels of the World, which captures the spirit of its surroundings with eco-friendly design and exquisite service. Discover these Sabah boutique hotels with spa offerings and let them enhance your journey as you begin planning your unforgettable escape.

List Of Best Boutique Hotels with Spa Sabah

boutique hotels in Sabah

Bunga Raya Island Resort & Spa

Resort
Polish Bay, Gaya Island, 88778 Gaya Island, Malaysia

Nestled in the emerald embrace of Gaya Island, Bunga Raya Island Resort & Spa is a luxurious sanctuary where the jungle meets the azure waves of the South China Sea. Each villa, adorned with exquisite wooden furnishings, offers a private balcony that invites you to immerse yourself in nature's tranquil beauty while indulging in modern comforts and swathes of romance.

Total Relaxation - Indulge in serene pampering at our world-class spa, where the soothing sounds of nature accompany your treatments, allowing every stress to melt away as you experience blissful tranquility in an atmosphere that feels like your own exclusive retreat.

Eco Break - Embrace the essence of eco-conscious luxury as you explore vibrant coral reefs while snorkeling or glide through crystal-clear waters in a kayak—where each adventure brings you closer to the breathtaking beauty of your surroundings and the local wildlife that thrives here.

Private Villas - Experience intimacy in our spacious villas, each uniquely designed with natural textures and plush amenities that beckon you to unwind; some even feature private plunge pools, perfect for a secluded dip under the stars amidst the gentle rustle of leaves.

Guest Experiences - Guests were enchanted by the mesmerizing views from their balconies at dawn, the warm aroma of freshly grilled seafood wafting from Pantai Restaurant, and the delightful surprise of encountering playful monitor lizards exploring the lush paths around the resort.

boutique hotels in Sabah

Le Meridien Kota Kinabalu

Hotel
Jalan Tun Fuad Stephen, Sinsuran, 88000 Kota Kinabalu, Malaysia

Nestled in the vibrant heart of Kota Kinabalu, Le Meridien invites you to indulge in a luxurious escape where modern elegance meets tropical allure. With its breathtaking views of the South China Sea and an ambiance that whispers romance, this five-star haven is perfect for couples seeking intimacy or adventure seekers eager to explore the diverse beauty of Malaysia's coastal jewel.

Romantic Retreat - Savor the art of relaxation at the stunning Azure Pool Bar & Café, where gentle waves lap against the shore while you sip on handcrafted cocktails under the sunset sky, creating a tapestry of serene moments and cherished memories.

Culinary Delights - Embark on a culinary journey at Favola Italian Restaurant, where the aroma of freshly baked pizza mingles with rich pasta dishes, setting the stage for an unforgettable dining experience that captivates both your palate and your heart.

Spa Escapes - Rejuvenate your senses in the tranquil spa sanctuary, where soothing scents envelop you as expert hands melt away tension, leaving you blissfully refreshed and ready to embrace the enchanting surroundings.

Guest Experiences - As guests unwind by the poolside cabana, the laughter of friends echoes softly in the air, mingling with the enticing scent of grilled delicacies from the nearby night food market. One guest fondly recalled being welcomed by the smiling staff, who remembered their favorite cocktail, making every evening feel like a warm reunion.

boutique hotels in Sabah

Gaya Island Resort - Small Luxury Hotels of the World

Resort
Malohom Bay, Pulau Gaya, Tunku Abdul Rahman Park, 88000 Gaya Island, Malaysia

Nestled amidst the lush embrace of Borneo's vibrant rainforest, Gaya Island Resort offers an exquisite haven where luxury meets nature. With sweeping vistas of the South China Sea and the sounds of gentle waves lapping against a private beach, every moment here invites serenity and romance—a perfect retreat for couples and seekers of tranquility alike.

Total relaxation - Immerse yourself in ultimate bliss at Spa Village, where soothing scents of essential oils mingle with the sound of rustling leaves, offering the perfect escape with treatments designed to rejuvenate both body and soul.

Romantic Break - Each elegantly appointed villa provides a private balcony overlooking breathtaking sunsets, allowing couples to unwind together while savoring intimate moments under the stars, the soft whispers of the breeze enhancing the ambiance.

Chic Dining Experiences - Indulge in diverse culinary delights, from fresh catch at Fisherman's Cove to the artistry of Omakase; guests relish meals that awaken their senses, complemented by stunning views that elevate each dining occasion into an unforgettable experience.

Guest Experiences - One guest recounted the pure joy of discovering their villa adorned with birthday decorations upon arrival—an unexpected gesture that made their celebration feel all the more special as they enjoyed luxurious spa treatments and the serene backdrop of the jungle, punctuated by birdsong and the shimmering ocean beyond.

boutique hotels in Sabah

Gayana Marine Resort

Resort
Malohom Bay, Gaya Island, 88000 Gaya Island, Malaysia

Nestled at the edge of a vibrant jungle on Gaya Island, Gayana Marine Resort invites you to immerse yourself in a sanctuary where luxury meets nature. Each spacious overwater villa offers exquisite wooden interiors and breathtaking views, creating an intimate escape that whispers romance and adventure. The gentle lullaby of the ocean waves sets the perfect backdrop for a serene getaway, where every moment is crafted for blissful relaxation.

Romantic Getaway - With secluded overwater villas and private pools, every couple can find their own tranquil hideaway, enhanced by stunning sunsets that paint the sky in hues of orange and pink. Perfect for honeymooners or those seeking a romantic retreat, the atmosphere is imbued with a sense of shared intimacy.

Spa & Relaxation - Indulge in rejuvenating treatments designed to harmonize body and spirit, all while surrounded by the soothing sounds of nature. From aromatic oils infused with local essences to the gentle caress of skilled hands, each spa experience promises total bliss.

Eco-Conscious Retreat - As a haven for eco-conscious travelers, Gayana Marine Resort blends sustainability with unparalleled comfort. Guests can explore vibrant coral reefs teeming with marine life, reminding them of nature's untouched beauty right at their doorstep, making every snorkeling or diving trip a magical encounter.

Guest Experiences - One guest marveled at the delightful aroma wafting from the kitchen during breakfast, as fresh pastries mingled with the salty breeze. Others cherished the friendly whispers of staff who remembered their names and preferences, adding a personal touch that made every meal feel like dining among friends.

boutique hotels in Sabah

Nexus Resort & Spa Karambunai

Resort
Off Jalan Sepangar Bay, 88993 Kota Kinabalu, Malaysia

Nestled on the serene shores of Karambunai, Nexus Resort & Spa invites you to indulge in a world where romance meets luxury. With its breathtaking ocean views and lush gardens, this upscale retreat is a sanctuary for couples and wellness seekers alike, offering an intimate escape from the everyday hustle and bustle.

Total Relaxation - Discover a haven of tranquility at Borneo Spa, where the gentle sound of waves complements the soothing aromas of essential oils, wrapping you in a cocoon of serenity as skilled therapists work their magic.

Beach Life - Experience the unspoiled beauty of a private beach, where soft sands meet crystal-clear waters, creating the perfect backdrop for sunset strolls and spontaneous surf lessons amidst gentle ocean waves.

Wellbeing - Awaken your senses with invigorating yoga classes by the sea, or unwind under the sun at the three shimmering outdoor pools, each surrounded by tropical landscapes that beckon relaxation and rejuvenation.

Guest Experiences - As you wander the resort, you may catch the delightful chirping of songbirds flitting through the gardens, while friendly staff members greet you with warm smiles and ask about your day, making you feel genuinely welcomed like an old friend.

Other great option in Sabah

boutique hotels in Sabah
No 20, Jalan Aru, Tanjung Aru, Kota Kinabalu, 88100, MY
8.6
2175 reviews
From $195

Guest Review: Great stay great fun best for families with children. Also amazing sunset !

boutique hotels in Sabah
No. 20, Jalan Aru, Kota Kinabalu, 88100, MY
9.2
1003 reviews
From $226

Sabah Boutique Hotels on the Map

Frequently Asked Questions

For a rejuvenating escape, consider the luxurious Bunga Raya Island Resort & Spa and Nexus Resort & Spa Karambunai. Both hotels feature exceptional spa services tailored to relax and invigorate your senses, set against the stunning backdrop of Sabah's natural beauty.

Yes! Families can enjoy a wonderful stay at Le Meridien Kota Kinabalu, which offers spacious accommodations and kid-friendly activities, alongside a full-service spa. Another great option is Gaya Island Resort - Small Luxury Hotels of the World, featuring family suites and engaging marine activities while also providing excellent spa treatments.

For an opulent experience, indulge in the luxurious ambiance of Gaya Island Resort - Small Luxury Hotels of the World and Bunga Raya Island Resort & Spa. Both hotels boast top-notch spa facilities and exquisite dining options, ensuring a lavish getaway amidst Sabah's picturesque landscapes.

Couples can find romance at Bunga Raya Island Resort & Spa, where private villas and intimate spa treatments create a perfect atmosphere. Additionally, Gayana Marine Resort offers breathtaking ocean views and cozy spaces for a memorable getaway together.

Absolutely! For travelers on a budget, Le Meridien Kota Kinabalu provides affordable luxury with its spa offerings and central location. Another excellent choice is Nexus Resort & Spa Karambunai, which combines value with relaxing spa services and easy access to beautiful beaches.