The 9 Best Boutique Hotels with Spa in Borneo (2025)

Nestled in the heart of Southeast Asia, Borneo, Brunei Darussalam, enchants with its vibrant culture, lush rainforests, and stunning architectural marvels that reflect a blend of ancient traditions and modern innovation. As you wander through this captivating destination, you'll discover a culinary tapestry rich with spices and flavors, alongside the warmth of its hospitable locals. The boutique hotel scene here promises an unforgettable experience, where personalized service meets extraordinary design and a strong sense of place. For a touch of opulence, The Empire Brunei stands out with its palatial architecture and breathtaking coastal views, while Mulu Marriott Resort offers a serene escape amid UNESCO-listed rainforests, perfect for adventurers and nature lovers alike. Meanwhile, the exquisite Bunga Raya Island Resort & Spa invites guests to unwind on pristine beaches, creating a true sanctuary of relaxation. Whether you seek luxury or unique local charm, Borneo boutique hotels with spa facilities cater to every desire, encouraging travelers to explore this hidden gem and plan their next unforgettable getaway.

List Of Best Boutique Hotels with Spa Borneo

boutique hotels in Borneo

The Empire Brunei

Resort
Jerudong, Tutong Muara Highway, BG3122 Bandar Seri Begawan, Brunei

Nestled along the tranquil shores of the South China Sea, The Empire Brunei is a luxurious retreat where royal hospitality meets the serenity of nature. Surrounded by lush tropical rainforests and pristine beaches, this exclusive sanctuary offers an exquisite blend of comfort and elegance, inviting guests to immerse themselves in a world of unparalleled beauty and relaxation.

Total Relaxation - Indulge in ultimate rejuvenation at the resort's lavish spa, where skilled therapists work their magic with soothing scents of lavender and eucalyptus wafting through the air, enveloping you in tranquility as you unwind amidst the serene surroundings.

Golf Oasis - Challenge your skills on the breathtaking 18-hole Jack Nicklaus Signature golf course, where emerald fairways meet panoramic views of the shimmering sea, making each swing feel like a walk through paradise.

Culinary Odyssey - Savor diverse flavors at any of the multiple on-site restaurants, from authentic local dishes that capture the essence of Bruneian culture to international cuisine, all prepared with the freshest ingredients and paired with impeccable service in enchanting settings.

Guest Experiences - As the sun dipped below the horizon, one guest recalled sipping afternoon tea on their spacious balcony, the warm breeze carrying the scent of blooming frangipani, while another delighted in the crisp linen sheets of their enormous bed, feeling cocooned in comfort after a day of exploring.

boutique hotels in Borneo

Mulu Marriott Resort

Resort
Sungai Melinau, PO Box 1145, 98000 Mulu, Malaysia

Tucked away in the heart of the lush Mulu rainforest, Mulu Marriott Resort offers a sanctuary of tranquility and elegance where luxury meets nature. Surrounded by towering trees and the gentle whisper of the Melinau Paku River, each moment spent here feels like stepping into a serene escape from the world—a perfect retreat for couples seeking romance or explorers yearning for adventure.

Total Relaxation - Unwind in the resort's expansive pool area, where the stillness of the jungle creates a soothing soundtrack to your sun-drenched days. Whether you’re lounging under a shaded cabana or enjoying a refreshing cocktail as you listen to the rustling leaves, every corner invites indulgence and relaxation.

Culinary Delights - Savor culinary creations that celebrate local flavors, from exquisite breakfast buffets featuring tropical fruits to sumptuous dinners in a chic setting. Each meal is an experience, with aromas that captivate the senses and dishes that evoke smiles and satisfaction.

Adventure Awaits - With Gunung Mulu National Park just minutes away, embark on thrilling journeys through enchanting caves and breathtaking trails. The easy access to both guided excursions and self-discovery adventures ensures that your stay is filled with exploration, whether you're hiking through ancient paths or kayaking along serene waters.

Guest Experiences - As the sun sets behind the mountains, the resort transforms into a haven of peace—guests often remark on the stars that blanket the night sky, which create an atmosphere of wonder. One visitor fondly recalled the friendly staff who seemed to anticipate every need, even finding a boat ride when unexpected obstacles arose, embodying a spirit of hospitality that feels personal and genuine.

boutique hotels in Borneo

Bunga Raya Island Resort & Spa

Resort
Polish Bay, Gaya Island, 88778 Gaya Island, Malaysia

Nestled in the emerald embrace of Gaya Island, Bunga Raya Island Resort & Spa is a luxurious sanctuary where the jungle meets the azure waves of the South China Sea. Each villa, adorned with exquisite wooden furnishings, offers a private balcony that invites you to immerse yourself in nature's tranquil beauty while indulging in modern comforts and swathes of romance.

Total Relaxation - Indulge in serene pampering at our world-class spa, where the soothing sounds of nature accompany your treatments, allowing every stress to melt away as you experience blissful tranquility in an atmosphere that feels like your own exclusive retreat.

Eco Break - Embrace the essence of eco-conscious luxury as you explore vibrant coral reefs while snorkeling or glide through crystal-clear waters in a kayak—where each adventure brings you closer to the breathtaking beauty of your surroundings and the local wildlife that thrives here.

Private Villas - Experience intimacy in our spacious villas, each uniquely designed with natural textures and plush amenities that beckon you to unwind; some even feature private plunge pools, perfect for a secluded dip under the stars amidst the gentle rustle of leaves.

Guest Experiences - Guests were enchanted by the mesmerizing views from their balconies at dawn, the warm aroma of freshly grilled seafood wafting from Pantai Restaurant, and the delightful surprise of encountering playful monitor lizards exploring the lush paths around the resort.

boutique hotels in Borneo

Le Meridien Kota Kinabalu

Hotel
Jalan Tun Fuad Stephen, Sinsuran, 88000 Kota Kinabalu, Malaysia

Nestled in the vibrant heart of Kota Kinabalu, Le Meridien invites you to indulge in a luxurious escape where modern elegance meets tropical allure. With its breathtaking views of the South China Sea and an ambiance that whispers romance, this five-star haven is perfect for couples seeking intimacy or adventure seekers eager to explore the diverse beauty of Malaysia's coastal jewel.

Romantic Retreat - Savor the art of relaxation at the stunning Azure Pool Bar & Café, where gentle waves lap against the shore while you sip on handcrafted cocktails under the sunset sky, creating a tapestry of serene moments and cherished memories.

Culinary Delights - Embark on a culinary journey at Favola Italian Restaurant, where the aroma of freshly baked pizza mingles with rich pasta dishes, setting the stage for an unforgettable dining experience that captivates both your palate and your heart.

Spa Escapes - Rejuvenate your senses in the tranquil spa sanctuary, where soothing scents envelop you as expert hands melt away tension, leaving you blissfully refreshed and ready to embrace the enchanting surroundings.

Guest Experiences - As guests unwind by the poolside cabana, the laughter of friends echoes softly in the air, mingling with the enticing scent of grilled delicacies from the nearby night food market. One guest fondly recalled being welcomed by the smiling staff, who remembered their favorite cocktail, making every evening feel like a warm reunion.

boutique hotels in Borneo

Gaya Island Resort - Small Luxury Hotels of the World

Resort
Malohom Bay, Pulau Gaya, Tunku Abdul Rahman Park, 88000 Gaya Island, Malaysia

Nestled amidst the lush embrace of Borneo's vibrant rainforest, Gaya Island Resort offers an exquisite haven where luxury meets nature. With sweeping vistas of the South China Sea and the sounds of gentle waves lapping against a private beach, every moment here invites serenity and romance—a perfect retreat for couples and seekers of tranquility alike.

Total relaxation - Immerse yourself in ultimate bliss at Spa Village, where soothing scents of essential oils mingle with the sound of rustling leaves, offering the perfect escape with treatments designed to rejuvenate both body and soul.

Romantic Break - Each elegantly appointed villa provides a private balcony overlooking breathtaking sunsets, allowing couples to unwind together while savoring intimate moments under the stars, the soft whispers of the breeze enhancing the ambiance.

Chic Dining Experiences - Indulge in diverse culinary delights, from fresh catch at Fisherman's Cove to the artistry of Omakase; guests relish meals that awaken their senses, complemented by stunning views that elevate each dining occasion into an unforgettable experience.

Guest Experiences - One guest recounted the pure joy of discovering their villa adorned with birthday decorations upon arrival—an unexpected gesture that made their celebration feel all the more special as they enjoyed luxurious spa treatments and the serene backdrop of the jungle, punctuated by birdsong and the shimmering ocean beyond.

boutique hotels in Borneo

Gayana Marine Resort

Resort
Malohom Bay, Gaya Island, 88000 Gaya Island, Malaysia

Nestled at the edge of a vibrant jungle on Gaya Island, Gayana Marine Resort invites you to immerse yourself in a sanctuary where luxury meets nature. Each spacious overwater villa offers exquisite wooden interiors and breathtaking views, creating an intimate escape that whispers romance and adventure. The gentle lullaby of the ocean waves sets the perfect backdrop for a serene getaway, where every moment is crafted for blissful relaxation.

Romantic Getaway - With secluded overwater villas and private pools, every couple can find their own tranquil hideaway, enhanced by stunning sunsets that paint the sky in hues of orange and pink. Perfect for honeymooners or those seeking a romantic retreat, the atmosphere is imbued with a sense of shared intimacy.

Spa & Relaxation - Indulge in rejuvenating treatments designed to harmonize body and spirit, all while surrounded by the soothing sounds of nature. From aromatic oils infused with local essences to the gentle caress of skilled hands, each spa experience promises total bliss.

Eco-Conscious Retreat - As a haven for eco-conscious travelers, Gayana Marine Resort blends sustainability with unparalleled comfort. Guests can explore vibrant coral reefs teeming with marine life, reminding them of nature's untouched beauty right at their doorstep, making every snorkeling or diving trip a magical encounter.

Guest Experiences - One guest marveled at the delightful aroma wafting from the kitchen during breakfast, as fresh pastries mingled with the salty breeze. Others cherished the friendly whispers of staff who remembered their names and preferences, adding a personal touch that made every meal feel like dining among friends.

boutique hotels in Borneo

Swiss-Belhotel Borneo Banjarmasin

Hotel
Jl. Pangeran Antasari no. 86A, 70241 Banjarmasin, Indonesia

Nestled in the vibrant heart of Banjarmasin, the Swiss-Belhotel Borneo offers a serene escape where modern luxury meets the rich tapestry of Indonesian culture. With lush gardens framing its outdoor swimming pool and an atmosphere infused with romance, this hotel is the perfect backdrop for couples seeking intimacy or adventure. Every moment here is filled with the promise of relaxation and exploration, making it an ideal sanctuary away from the bustle.

Romantic Retreat - Indulge in beautifully appointed rooms that exude sophistication, complete with plush textures and elegant furnishings. The gentle murmur of the nearby pool creates an intimate ambiance, perfect for unwinding after a day of exploring the local markets.

Total Relaxation - The inviting outdoor swimming pool beckons guests to bask under the tropical sun while surrounded by verdant foliage. The occasional splash of water and the sweet scent of blooming flowers transport you to a state of blissful tranquility.

Culinary Delights - Savor a sumptuous buffet breakfast featuring local flavors alongside American classics, all enjoyed in a bright, airy dining space. Each bite is complemented by cheerful staff, whose warm smiles create a welcoming atmosphere that makes every meal feel special.

Guest Experiences - As morning light filters through the windows, guests relish the aroma of freshly brewed coffee wafting through the air, mingling with laughter from friends gathered at breakfast. One guest noted the delightful surprise of meeting attentive staff who remembered their previous stay—personal touches that make this hotel feel like a cherished home away from home.

boutique hotels in Borneo

Gardenia Resort and Spa

Resort
Jl. Ahmad Yani 2, 78391 Pontianak, Indonesia

Nestled in the heart of Pontianak, Gardenia Resort and Spa offers a serene retreat where nature and luxury elegantly intertwine. Guests are enveloped in an atmosphere of tranquility, with lush greenery reminiscent of Bali surrounding this modern oasis, making it an idyllic escape for couples, wellness seekers, and cultural explorers alike.

Total Relaxation - Indulge in blissful pampering at our spa, where soothing scents of essential oils fill the air, transporting you to a state of serene relaxation. Each massage is tailored to rejuvenate both body and spirit, ensuring your wellness journey is as tranquil as the gardens that embrace you.

Romantic Break - Our bungalows, designed with the enchanting Kalimantan long-house style, feature wooden fixtures and slanted roofs that evoke a sense of intimacy. Floor-to-ceiling windows frame picturesque views, inviting you to bask in the natural light while sipping on refreshing avocado juice—a perfect companion for lazy afternoons.

Culinary Delights - Savor a culinary journey at Papyrus Restaurant, where the vibrant flavors of Western and Asian cuisines come alive against a backdrop of lush gardens. The aroma of freshly prepared dishes mingles with the gentle sounds of nature, creating an unforgettable dining experience that celebrates local ingredients.

Guest Experiences - Imagine waking up to the soft rustle of leaves and the distant chirping of birds, as the fragrance of tropical flowers wafts through your bungalow. One guest recalled how the staff welcomed them with warm smiles and delightful surprises, like the perfect avocado juice that became their daily refreshment—a little piece of paradise found in every sip.

boutique hotels in Borneo

Nexus Resort & Spa Karambunai

Resort
Off Jalan Sepangar Bay, 88993 Kota Kinabalu, Malaysia

Nestled on the serene shores of Karambunai, Nexus Resort & Spa invites you to indulge in a world where romance meets luxury. With its breathtaking ocean views and lush gardens, this upscale retreat is a sanctuary for couples and wellness seekers alike, offering an intimate escape from the everyday hustle and bustle.

Total Relaxation - Discover a haven of tranquility at Borneo Spa, where the gentle sound of waves complements the soothing aromas of essential oils, wrapping you in a cocoon of serenity as skilled therapists work their magic.

Beach Life - Experience the unspoiled beauty of a private beach, where soft sands meet crystal-clear waters, creating the perfect backdrop for sunset strolls and spontaneous surf lessons amidst gentle ocean waves.

Wellbeing - Awaken your senses with invigorating yoga classes by the sea, or unwind under the sun at the three shimmering outdoor pools, each surrounded by tropical landscapes that beckon relaxation and rejuvenation.

Guest Experiences - As you wander the resort, you may catch the delightful chirping of songbirds flitting through the gardens, while friendly staff members greet you with warm smiles and ask about your day, making you feel genuinely welcomed like an old friend.

Best Boutique Hotels with Spa that guests love in Borneo

boutique hotels in Borneo
Jalan Tun Fuad Stephen, Sinsuran, 88000 Kota Kinabalu, Malaysia
8.8
2437 reviews
From $142

Guest Review: Wonderful service staff Very helpful Fantastic location with great view

boutique hotels in Borneo
Sungai Melinau, PO Box 1145, 98000 Mulu, Malaysia
9.1
675 reviews
From $155

Guest Review: Everything was great. I can’t imagine better place. Very quiet, stuff super friendly and helpful, they make every wish come true. Food was amazing!Definitely we will come back.

boutique hotels in Borneo
Off Jalan Sepangar Bay, 88993 Kota Kinabalu, Malaysia
6.8
512 reviews
From $205

Guest Review: Excellent service, warm welcome, beautiful scenery, excellent staff, nice facilities, especially for its sports center's staffs! absolutely perfect! Wanna come again! Missing here already!

Other great option in Borneo

boutique hotels in Borneo
No 20, Jalan Aru, Tanjung Aru, Kota Kinabalu, 88100, MY
8.6
2175 reviews
From $195

Guest Review: Great stay great fun best for families with children. Also amazing sunset !

boutique hotels in Borneo
No. 20, Jalan Aru, Kota Kinabalu, 88100, MY
9.2
1003 reviews
From $226

Borneo Boutique Hotels on the Map

Frequently Asked Questions

For an indulgent experience, consider Bunga Raya Island Resort & Spa, known for its luxurious spa treatments amid stunning natural beauty. Alternatively, Mulu Marriott Resort offers a serene spa environment and beautiful jungle views, providing a tranquil retreat.

Couples will love the intimate atmosphere at Gaya Island Resort - Small Luxury Hotels of the World, featuring private villas and incredible sunset views. Another great choice is Bunga Raya Island Resort & Spa, where you can enjoy romantic dinners by the beach or rejuvenating couple’s spa treatments.

Yes! Gayana Marine Resort is committed to sustainability and offers eco-friendly accommodations along with a fantastic marine conservation program. Also, Bunga Raya Island Resort & Spa blends luxury and nature, emphasizing environmental conservation while providing modern comforts.

For top-tier luxury, check out The Empire Brunei, which features opulent spa facilities and exquisite dining options. Additionally, Nexus Resort & Spa Karambunai combines elegant accommodations with lavish spa services overlooking the stunning coastline.

For great value, consider Swiss-Belhotel Borneo Banjarmasin, offering comfortable stays and spa services at reasonable rates. Another option is Gardenia Resort and Spa, known for its affordable luxury and delightful wellness offerings in a scenic setting.

Hotels like Le Meridien Kota Kinabalu provide breathtaking views of the South China Sea along with first-class spa treatments. Similarly, Gaya Island Resort - Small Luxury Hotels of the World not only offers stunning vistas but also a comprehensive spa experience for relaxation.

Families can enjoy Nexus Resort & Spa Karambunai, which has spacious accommodations and kid-friendly activities alongside a relaxing spa. Also, Gardenia Resort and Spa welcomes families with fun amenities and a soothing spa for adults looking to unwind.