The 8 Best Boutique Hotels in Puerto Ayora (2025)

Nestled in the heart of the Galápagos Islands, Puerto Ayora pulses with an enchanting blend of vibrant wildlife and rich culture. The town’s picturesque waterfront is adorned with colorful local markets, inviting seafood restaurants, and a backdrop of lush highlands. Here, the air is alive with the soft sounds of nature, as sea lions bask on the docks and giant tortoises roam nearby. For travelers seeking an authentic experience, the best boutique hotels in Puerto Ayora provide more than just accommodations; they offer a unique glimpse into the local lifestyle. Hotel Cucuve’s charming design mirrors the natural beauty surrounding it, making guests feel at one with the island’s essence. Meanwhile, Hotel Acacia captivates with its idyllic location close to the beach and personalized service that makes every moment special. Semilla Verde Boutique Hotel adds a touch of luxury and tranquility, enveloping visitors in a serene atmosphere amidst stunning landscapes. Start exploring our collection and let your adventure in this remarkable destination begin!

Top Boutique Hotels in Puerto Ayora

boutique hotels in Puerto Ayora

Hotel Cucuve

Hotel
Av. Charles Binford, Isla Santa Cruz, 200350 Puerto Ayora, Ecuador

Nestled in the vibrant heart of Puerto Ayora, Hotel Cucuve is a sanctuary where modern luxury meets eco-conscious charm. Embrace an atmosphere that invites romance and relaxation, as you sip on fresh organic coffee while basking in the soft sounds of nature, all just steps away from the enchanting Galapagos Islands' allure.

Total Relaxation - Experience pure tranquility in rooms adorned with chic decor and plush bedding, ensuring every night is a restful haven amidst your adventures. Balconies invite gentle breezes, providing a perfect spot to unwind with a book or enjoy sunrise views over the lush surroundings.

Culinary Delights - Awake each morning to a breakfast spread that tantalizes the senses, featuring local flavors and artisanal touches. From fresh fruit to delightful pastries, every bite is crafted to nourish both body and spirit, setting the tone for your day of exploration.

Eco-Conscious Commitment - Immerse yourself in a stay that prioritizes sustainability without compromising comfort. With eco-friendly practices woven into the fabric of the hotel, you’ll find thoughtful touches like reusable shopping bags and informative guides about preserving the natural beauty around you.

Guest Experiences - As you step into Hotel Cucuve, the clean scent of fresh linens mingles with the inviting aroma of brewing coffee. You might catch the staff arranging stuffed animals sweetly on the beds, a charming detail that adds a personal touch, making you feel right at home in this well-run boutique retreat.

boutique hotels in Puerto Ayora

Hotel Acacia

Hotel
C/ Floreana y Matazarnos, 200350 Puerto Ayora, Ecuador

Nestled in the heart of Puerto Ayora, Hotel Acacia envelops you in an atmosphere where luxury meets the enchanting allure of the Galapagos. With its elegant design and serene outdoor spaces, this boutique hotel offers a romantic haven for couples and a tranquil retreat for all travelers seeking comfort and connection amidst stunning natural beauty.

Romantic Escape - Indulge in intimate moments on your private terrace or by the shimmering pool, where the soft sound of water cascades creates a soothing backdrop to your getaway. Each room is adorned with luxurious touches that invite you to unwind and savor every moment together.

Culinary Delights - Start your day with a sumptuous breakfast that caters to every palate, from vibrant fruit platters to hearty American classics. The aroma of freshly brewed coffee fills the air as you enjoy your meal in a warm, inviting setting, preparing you for a day of exploration.

Prime Location - Conveniently located just off the bustling main square, Hotel Acacia serves as the perfect launchpad for discovering local markets and stunning beaches, with the gentle rustle of palm trees nearby adding to the island's serene charm.

Guest Experiences - Guests often rave about the attentive staff, who go above and beyond—like one visitor recalling how a team member escorted them to a clinic, ensuring every concern was met with kindness. The comfortable beds wrapped in soft linens promise restful nights, and the delightful sounds of laughter from fellow travelers in the lounge create a welcoming, communal atmosphere.

boutique hotels in Puerto Ayora

Semilla Verde Boutique Hotel

Hotel
Km 12 via a Baltra, Puerto Ayora, EC200350 Puerto Ayora, Ecuador

Nestled in the lush highlands of Santa Cruz Island, Semilla Verde Boutique Hotel beckons with its serene embrace of nature and luxury. Imagine waking to the gentle sounds of native birds amid a backdrop of verdant gardens where giant tortoises roam freely—an idyllic escape for those seeking romance, adventure, or simply a tranquil retreat.

Back to Nature - Immerse yourself in a natural paradise as you explore extensive gardens and winding nature trails, all while being serenaded by the songs of tropical birds and the rustle of leaves swaying in the breeze.

Romantic Getaway - Unwind in your private balcony overlooking panoramic views of the Galapagos National Park, where each sunset casts a spell of golden hues, perfect for intimate evenings under the stars.

Total Relaxation - Indulge in a daily breakfast feast featuring farm-fresh eggs and ripe, juicy fruits, or savor an evening meal that brings together local flavors—all enjoyed in a cozy ambiance that feels like home.

Guest Experiences - Guests have described wandering through the enchanting grounds, delighting in the aroma of fresh avocados plucked straight from the tree, while soft laughter mingles with the sound of distant waves—a simple pleasure that lingers long after the journey ends.

boutique hotels in Puerto Ayora

Finch Bay Galapagos Hotel

Hotel
Barrio Punta Estrada , EC200350 Puerto Ayora, Ecuador

Nestled against the azure backdrop of the Galapagos, Finch Bay Galapagos Hotel invites you to an intimate escape that seamlessly blends luxury with nature's wonders. With soft ocean breezes caressing your skin and the rhythmic lull of waves nearby, each moment here feels like a page from a dream—where romance flourishes and adventure awaits just beyond your doorstep.

Outstanding Location - Perched on the pristine shores of Los Alemanes Beach, this hotel offers an unrivaled proximity to both stunning natural landscapes and the vibrant heart of Puerto Ayora. Immerse yourself in the beauty of the surrounding beaches, easily accessible by a charming boat shuttle that enhances your sense of adventure.

Spa Breaks - Indulge in rejuvenating treatments that harmonize with the serene atmosphere of the Galapagos. The spa’s soothing aromas and tranquil sounds create a sanctuary where wellness enthusiasts can unwind and reflect on their day's adventures amidst nature’s splendor.

Beach Life - With direct access to a secluded stretch of beach, guests can savor peaceful moments under swaying palm trees while listening to the gentle crash of surf. Here, sun-kissed afternoons melt into starlit evenings, perfect for romantic strolls along the shore or basking in the warmth of a private hot tub under a blanket of stars.

Guest Experiences - One guest described the delightful surprise of a breakfast spread filled with tropical fruits and freshly baked pastries, whose sweet scents wafted through the air, making mornings feel special. Another recalled how the poolside bar's vibrant atmosphere transformed their evening swim into a lively experience, enhanced by the laughter of friends and the twinkling lights around the garden.

boutique hotels in Puerto Ayora

Hotel Solymar

Hotel
Avenida Charles Darwin y Tomas de Berlanga, Puerto Ayora, Isla Santa Cruz, 200350 Puerto Ayora, Ecuador

Nestled along the serene shores of Pelican Bay, Hotel Solymar invites you into a world where the Mediterranean charm meets the exotic allure of the Galapagos Islands. With each room offering sweeping ocean views and a private balcony, this boutique retreat promises an intimate sanctuary for lovers, adventurers, and those seeking a tranquil escape amidst breathtaking nature.

Romantic Getaway - Experience unparalleled romance as you stroll hand-in-hand along the sandy shores, with the sunset painting the sky in hues of orange and pink. The gentle whisper of the waves sets the perfect backdrop for cherished moments away from the bustle of everyday life.

Culinary Delights - Savor an exquisite blend of Pacific fresh seafood with local flavors at the ocean-side restaurant, where every dish tells a story of its origins, from sushi crafted with precision to vibrant dishes bursting with the essence of Ecuadorian cuisine. The tantalizing aroma of grilled delicacies wafts through the air, inviting you to indulge.

Eclectic Local Exploration - Just steps away from the vibrant heart of Puerto Ayora, immerse yourself in the colorful markets, chic boutiques, and charming art galleries that showcase the spirit of the Galapagos. Discover unique souvenirs and regional treasures while being embraced by the lively atmosphere of the local community.

Guest Experiences - Guests have been enchanted by the delightful staff, particularly Andrea, whose warmth and genuine care make you feel at home right away. Imagine sipping your morning coffee while listening to the distant chatter of marine iguanas and the soft rustling of palm leaves, the sun warming your skin as you prepare for another day of adventure.

boutique hotels in Puerto Ayora

Hotel Isla Sol by Solymar

Hotel
Av. Charles Darwin y Tomas de Berlanga, Puerto Ayora, Isla Santa Cruz, 200350 Puerto Ayora, Ecuador

Nestled in the vibrant heart of Puerto Ayora, Hotel Isla Sol by Solymar invites you to indulge in an enchanting blend of contemporary luxury and local charm. With sweeping views of both the bustling cityscape and tranquil seafront, this chic boutique retreat offers an intimate escape where every detail is curated for your comfort and delight.

Outstanding Location - Just steps from the iconic Charles Darwin Research Station, Hotel Isla Sol serves as a perfect launchpad for exploring the unique biodiversity of the Galápagos Islands, with charming boutiques and lively cafés lining the streets nearby.

Total Relaxation - Relax and rejuvenate at our partner hotel’s ocean-side restaurant, featuring a delectable menu that marries fresh seafood with local flavors, all while you savor the salty breeze and the distant sounds of waves lapping against the shore.

Chic Accommodations - Our elegantly designed rooms are flooded with natural light from large windows, showcasing breathtaking views. Enjoy premium bedding paired with the soothing sound of rustling palm fronds, creating a sanctuary of restful tranquility.

Guest Experiences - Guests have fondly reminisced about the warm hospitality, as staff members went above and beyond, like the time one traveler’s lost luggage was promptly retrieved, bringing immense relief amidst the exotic surroundings. The shimmering pool beckons with its inviting waters, while the air fills with the scent of sea salt and blooming flowers, making it a serene haven.

List of other Boutique Hotels near Puerto Ayora

We have created a list with the best boutique hotels near Puerto Ayora. Hope you enjoy it. We think it might be the best of its kind around

boutique hotels in Puerto Ayora

La Casa de Marita

Hotel
Isla Isabela, 170140 Puerto Villamil, Ecuador

Nestled beneath the swaying palms and enveloped by the soft whispers of the Pacific waves, La Casa de Marita offers an intimate sanctuary on Isla Isabela. Here, the chic interiors blend harmoniously with the vibrant local flora, creating a tranquil yet sophisticated escape for discerning travelers seeking romance or adventure in equal measure.

Breathtaking Ocean Views - Each suite features private balconies that invite you to soak in sweeping ocean views, where the sun-dappled horizon meets the azure waters, providing the perfect backdrop for sunrise coffee rituals or sunset strolls.

Culinary Delights from Nature - The hotel’s restaurant serves a symphony of flavors crafted from organic ingredients sourced directly from Marita's own plantation, allowing you to indulge in culinary masterpieces while marveling at the serene beach just beyond your table.

Charming Seaside Relaxation - Relaxation takes on new meaning here, as you sway gently in the hammocks overlooking the sea, the salty breeze weaving through your hair while the distant sound of laughter and waves creates a soothing soundtrack to your leisurely days.

Guest Experiences - Imagine waking to the aroma of freshly brewed coffee filling your room as you step out onto your terrace, greeted by a panoramic sea view. Guests have relished mornings spent savoring beautifully presented breakfasts, each detail lovingly crafted by attentive staff, and unwinding in plush bathrobes after a day filled with exploration.

boutique hotels in Puerto Ayora

Hotel Casa Blanca

Hotel
Avenida Charles darwin y Herman Melville, 200150 Puerto Baquerizo Moreno, Ecuador

Nestled in the heart of Puerto Baquerizo Moreno, Hotel Casa Blanca is a charming escape where the rhythm of the ocean dances with the tranquil allure of chic elegance. Each room, adorned with subtle nautical motifs, beckons you to unwind as you gaze upon breathtaking views of the harbor, while the soft murmur of waves serenades your senses, making it an idyllic retreat for couples and adventure seekers alike.

Romantic Break - With its intimate ambiance and stunning ocean views, every corner of Hotel Casa Blanca whispers romance, perfect for honeymooners and couples seeking a special getaway.

Boutique - This boutique hotel captures the essence of coastal Ecuador with retro ocean-themed decor and cozy, uniquely styled rooms, immersing guests in a serene seaside charm that feels both personal and inviting.

Total relaxation - Savor leisurely mornings at the delightful on-site restaurant, where the aroma of freshly brewed coffee mingles with the salty sea breeze, providing a blissful start to your day as you enjoy a delectable à la carte breakfast overlooking the water.

Guest Experiences - Guests have cherished lazy afternoons on the expansive terrace, where the gentle lapping of the waves and the occasional rustle of palm leaves create a soothing soundtrack, while the friendly staff often goes the extra mile—like surprising travelers with a quick hand-off of forgotten belongings delivered by boat from a nearby island.

More Great Places to Stay in Puerto Ayora:

Best Boutique Hotels that guests love in Puerto Ayora

boutique hotels in Puerto Ayora
Avenida Charles darwin y Herman Melville, 200150 Puerto Baquerizo Moreno, Ecuador
9.1
282 reviews
From $134

Guest Review: Amazing location by San Cristobal’s pier. The furnishings give a sea feeling inside the rooms. The terrace has the best possible views.

boutique hotels in Puerto Ayora
C/ Floreana y Matazarnos, 200350 Puerto Ayora, Ecuador
9.4
248 reviews
From $228

Guest Review: The Acacia is a lovely hotel. In addition to the large comfortable rooms with modern bathrooms, the staff is wonderful. I cannot say enough about the level of professionalism, kindness and hospitality provided. One of the staff members even accompanied us to the medical clinic. Breakfast was also a treat. Location is just off the main square. Very easy walk to everything.

boutique hotels in Puerto Ayora
Isla Isabela, 170140 Puerto Villamil, Ecuador
8.5
99 reviews
From $176

Guest Review: Staff was extremely helpful. Specifically Jonathan. He helped us navigate a misunderstanding with our booking and made sure we didn't need to wait a long time for it to be resolved. Having two small children, we appreciated his attention to our needs. He was also helpful with recommendations for activities.

Other great option in Puerto Ayora

boutique hotels in Puerto Ayora
Puerto Ayora, 200350, EC
0.0
0 reviews
From $947

Puerto Ayora Boutique Hotels on the Map

Frequently Asked Questions

For food lovers visiting Puerto Ayora, the Finch Bay Galapagos Hotel offers an exquisite dining experience with local flavors and fresh seafood. Alternatively, Hotel Solymar is known for its delicious meals featuring organic ingredients sourced from nearby farms, making it a perfect spot for discerning palates.

Couples looking for a romantic getaway should consider Semilla Verde Boutique Hotel, which provides stunning views and intimate settings, ideal for relaxing together. Another charming option is La Casa de Marita, where cozy accommodations and a beautiful beachfront enhance the romantic atmosphere.

For those seeking luxury, Finch Bay Galapagos Hotel stands out with its upscale amenities and exceptional service. Another excellent choice is Hotel Cucuve, offering luxurious rooms with modern design that cater to guests looking for elegance and comfort during their stay.

Families will love Hotel Isla Sol by Solymar for its spacious family rooms and kid-friendly amenities. Additionally, Hotel Casa Blanca provides a welcoming environment with activities for children, ensuring that parents can relax while their kids have fun.

If you're searching for breathtaking views, Semilla Verde Boutique Hotel is perched on a hill overlooking lush greenery, creating a tranquil atmosphere. Additionally, Finch Bay Galapagos Hotel boasts panoramic ocean views, making it a perfect choice for nature enthusiasts.

Travelers on a budget can enjoy a pleasant stay at Hotel Solymar, which offers comfortable accommodations without breaking the bank. Another great value option is Hotel Casa Blanca, providing cozy rooms and friendly service at an affordable rate.